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This guide assumes that Space Pirate Frigate has been completed and you arrive on Tallon IV.
Two Trip Mines Route:
Tallon Overworld (upon landing on Ship)
Space Jump Boots
Chozo Ruins
Missile Expansion - Main Plaza (Grapple)
Morph Ball
[Early Charge] Missile Expansion - Watery Hall Access
[Early Charge] Charge Beam
Bombs
Missile Expansion - Burn Dome
Missile Expansion - Gathering Hall
Varia Suit
<To Magmoor Caverns>
Magmoor Caverns
Artifact of Nature - Lava Lake
Missile Expansion - Triclops Pit
Missile Expansion - Storage Cavern
Energy Tank - Transport Tunnel A
<To Phendrana Drifts>
Phendrana Drifts First Visit
Boost Ball
Wave Beam
<To Magmoor Caverns>
Magmoor Caverns
Missile Expansion - Fiery Shores
<To Tallon Overworld>
Tallon Overworld
Missile Expansion - Transport Tunnel B
<To Chozo Ruins>
Chozo Ruins Second Visit
[Late Charge] - Missile Expansion - Watery Hall Access
[Late Charge] Charge Beam
Energy Tank - Furnace
Missile Expansion - Crossways
Ice Beam
<To Tallon Overworld>
Bars Skip in Life Grove
<To Phazon Mines>
Phazon Mines First Visit
Missile Expansion - Main Quarry
Grappling Beam
Missile Expansion - Elite Control Access
Main Power Bombs
[Can get Ventilation Shaft Energy Tank if necessary, more efficient if done later]
<To Magmoor Caverns>
Magmoor Caverns
Plasma Beam
Energy Tank - Magmoor Workstation
<To Phendrana Drifts>
Phendrana Drifts Second Visit
Missile Expansion - Frost Cave
Power Bomb Expansion - Phendrana's Edge
Artifact of Spirit - Phendrana's Edge
Missile Expansion - Gravity Chamber
Gravity Suit
Artifact of Elder - Control Tower
Super Missiles
Missile Expansion - Research Lab Hydra
Missile Expansion and Energy Tank - Research Lab Aether
Thermal Visor
Energy Tank - Transport Access
Missile Expansion - Quarantine Cave
Spider Ball
Energy Tank - Ruined Courtyard
Power Bomb Expansion - Ice Ruins West
Missile Expansion - Ice Ruins East (2x)
Missile Expansion - Phendrana Shorelines (2x)
Artifact of Sun
<To Magmoor Caverns>
Magmoor Caverns
Artifact of Strength - Warrior Shrine
Ice Spreader
<To Tallon Overworld>
<To Chozo Ruins>
Chozo Ruins Third Visit
Missile Expansion - Main Plaza (tree)
Missile Expansion - Ruined Shrine (up the halfpipe)
Wavebuster
Artifact of Lifegiver - Tower Chamber
Missile Expansion - Ruined Shrine (floor)
Missile Expansion - Main Plaza (up the halfpipe)
Missile Expansion - Ruined Nursery
Missile Expansion - Ruined Gallery (2x)
Missile Launcher
Energy Tank - Transport Access North
Artifact of Wild - Sunchamber
Missile Expansion - Vault
Energy Tank - Main Plaza
[No Training Chamber Wallcrawl] Power Bomb Expansion - Magma Pool
[No Training Chamber Wallcrawl] Missile Expansion - Training Chamber Access
[No Training Chamber Wallcrawl] Energy Tank - Training Chamber
[Training Chamber Wallcrawl] Energy Tank - Training Chamber
[Training Chamber Wallcrawl] Missile Expansion - Training Chamber Access
[Training Chamber Wallcrawl] Power Bomb Expansion - Magma Pool
Missile Expansion - Ruined Fountain
Missile Expansion - Dynamo (2x)
Missile Expansion - Watery Hall (underwater)
Missile Expansion - Furnace
Energy Tank - Hall of the Elders
Artifact of World - Hall of the Elders
<To Tallon Overworld>
Tallon Overworld
Missile Expansion - Overgrown Cavern
Missile Expansion - Frigate Crash Site (underwater)
Energy Tank - Cargo Freight Lift to Deck Gamma
Missile Expansion - Biohazard Containment
Energy Tank - Hydro Access Tunnel
Missile Expansion - Great Tree Chamber
Missile Expansion - Life Grove Tunnel
X-Ray Visor
Artifact of Chozo - Life Grove
<To Phazon Mines>
Phazon Mines Second Visit
Missile Expansion - Security Access A
Flamethrower
Artifact of Warrior - Elite Research
Missile Expansion - Elite Research
Energy Tank - Ventilation Shaft
Missile Expansion - Metroid Quarantine A
Missile Expansion - Fungal Hall Access
[Early. Risky!!] Artifact of Newborn - Phazon Mining Tunnel
Missile Expansion - Fungal Hall B
Missile Expansion - Metroid Quarantine B
Phazon Suit
[No Early Newborn] Artifact of Newborn - Phazon Mining Tunnel
Energy Tank - Processing Center Access
Missile Expansion - Phazon Processing Center
<To Magmoor Caverns>
<To Tallon Overworld>
Tallon Overworld Last Visit
Missile Expansion - Root Cave
Missile Expansion - Arbor Chamber
Missile Expansion - Landing Site
Artifact of Truth - Artifact Temple
Ridley and Metroid Prime